Metabolic Reconstruction

Reconstruction Database

Model Constrains & FBA

Core Textbook Model.mat

(Matlab File: Must have Matlab installed to work properly)

Core Textbook Model.xls

(Excel File)

GAMS & Sensitivity Analysis

Cars & Trucks.gms

FBA Small Network.gms

Core Textbook Model.gms

Gene Deletions

Shlomi Example.gms.txt

Gene Deletions Core Networks.gms.txt

(includes FBA, MOMA and ROOM)

Alternate Solutions

Flux Variability Analysis_CoreNetwork.gms.txt

Alternate Optima Small Network.gms.txt

Alternate Optima Core Network.gms.txt

Robustness & Phase Planes

Robustness Core Network.gms.txt

Flux Coupling & Batch Simulations

Flux Coupling Small Network.gms.txt

Batch Simulator Core Network.gms.txt

Regulatory Constraints

Core Regulation.gms.txt

rFBA Core Network.gms.txt

Metabolic Engineering

Productivity Envelop Core Network.gms.txt

Gene Expressions

Map Data 2 Rxns.gms.txt

Gene Expression Core Textbook Model Shlomi.gms.txt

Gene Expression Data.gms.txt